Similar HOG based on pairwise relations to

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0793853.1c.1a.6e.13a with 2 members (potassium channel subfamily)

Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata /

... /

Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Laurasiatheria / Perissodactyla /

Equus

Completeness score: 1.00

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This HOG has 77 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0793853.1c.1a.6e.13a	120	62	potassium channel subfamily
2	HOG:E0793853.1c.1a.6e	98	117	potassium channel subfamily
3	HOG:E0793853.1c.1a	83	497	potassium channel subfamily
4	HOG:E0793853.1c.1a.3b	82	66	potassium channel subfamily
5	HOG:E0793853.1c.1a.2a	14	7	potassium channel subfamily
6	HOG:E0824171	8	13	Potassium channel domain-containing protein
7	HOG:E0065031	8	12	calcium/potassium channel CAKC
8	HOG:E0801913.7c	6	18	calcium-activated potassium channel
9	HOG:E0801913.6g	6	13	calcium-activated potassium channel
10	HOG:E0801913.4b	6	5	calcium-activated potassium channel
11	HOG:E0793853.1c.1a.3b.5b	6	4	potassium channel subfamily
12	HOG:E0793853.1c.1a.2b.1b	6	3	potassium channel subfamily
13	HOG:E0343980.5b	6	3	Calcium-activated potassium channel BK alpha subunit domain-containing protein
14	HOG:E0801913.7a	5	6	calcium-activated potassium channel
15	HOG:E0801913.6i.6b	4	8	calcium-activated potassium channel
16	HOG:E0801913.5b	4	2	calcium-activated potassium channel
17	HOG:E0793853.1c.1a.6e.11b	4	2	potassium channel subfamily
18	HOG:E0793853.1c.1a.5b	4	2	potassium channel subfamily
19	HOG:E0793853.1c.1a.4b	4	2	potassium channel subfamily
20	HOG:E0793853.1c.1a.4a	4	2	potassium channel subfamily
21	HOG:E0793853.1c.1a.3b.2b	4	2	potassium channel subfamily
22	HOG:E0793853	4	535	potassium channel subfamily
23	HOG:E0343980.5c	4	2	Calcium-activated potassium channel BK alpha subunit domain-containing protein
24	HOG:E0343980	4	21	Calcium-activated potassium channel BK alpha subunit domain-containing protein
25	HOG:E0801913.6i.5a	3	2	calcium-activated potassium channel

Showing 1 to 25 of 77 rows rows per page